We have come to the Blue's Clues house at night and so we help Joe and Blue with their bedtime routine, their bedtime business. We watch as Joe tucks in Boris and then learn about important pre-sleepytime activities. The characters have a small clothing crisis, but with our help in identifying clothing through features such as spots and stripes, the problem is solved. We also help out with washing up, reading a story and more.
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A slightly different version of the song was part of this episode's video letter.
A kid throws a toothbrush out of the letter at the end. Joe picks up the toothbrush which had a clue (the 3rd one) on it.
This was the 2nd time an item came out from the video letter (the 1st was a popsicle stick [the 2nd clue] from "Blue's Surprise at Two O'Clock!" and the 3rd would be a stamp from "Our Neighborhood Festival"), the 2nd time a clue came from there (a clue [the 2nd; a stage] would be found in a video letter again in "Joe's Clues"), and the only time the 3rd clue was found this way.
After Joe drew the 3rd clue in his thinking chair, he realized he was already sitting in the thinking chair.